Genchek/ Genowiz/OptGene/Irnacheck


2022

 

Ethanol Extract of Elaeagnus glabra f. oxyphylla Branches Alleviates the Inflammatory Response Through Suppression of Cyclin D3/Cyclin-Dependent Kinase 11p58 …

HS Lim, E Sohn, YJ Kim, BY Kim… - Natural Product …, 2022 - journals.sagepub.com

… Normalized data were analyzed using Genowiz 4.0 (Ocimum Biosolutions). The

normalization decides the average intensity of all samples numerically equivalent to the average …

 

[HTML] Comparison of transcriptome between high-and low-marbling fineness in longissimus thoracis muscle of Korean cattle

SH Beak, M Baik - Animal Bioscience, 2022 - ncbi.nlm.nih.gov

… The read count data were processed based on the quantile normalization method using

Genowiz ver. 4.0.5.6 (Ocimum Biosolutions, Hyderabad, India). For functional annotation, we 

 

Anti-obesity effect of sulforaphane in broccoli leaf extract on 3T3-L1 adipocytes and ob/ob mice

SS Ranaweera, P Natraj, P Rajan… - The Journal of …, 2022 - Elsevier

… The read count data were processed based on Quantile normalization method using the

Genowiz version 4.0.5.6 (Ocimum Biosolutions, India). The PPI network was analyzed using …

 

 

2021

 

Blue laser-induced selective vasorelaxation by the activation of NOSs

SW Park, S Park, HK Choi, HJ Park, W Yu, HS Kim… - Microvascular …, 2021 - Elsevier

… The RC (Read Count) data were processed based on Global normalization method using

the Genowiz ™ version 4.0.5.6 (Ocimum Biosolutions, India). Gene classification was based 

 

[HTML] Association of protein Z with prediabetes and type 2 diabetes

YU Bae, JH You, NH Cho, LE Kim… - Endocrinology and …, 2021 - ncbi.nlm.nih.gov

… The numerical data were analyzed using the Genowiz 4.0 software (Ocimum Biosolutions,

Indianapolis, IN, USA). After analysis, the data on protein information were annotated using …

 

[HTML] Restoration of the adipogenic gene expression by naringenin and naringin in 3T3-L1 adipocytes

LA Dayarathne, SS Ranaweera, P Natraj… - Journal of Veterinary …, 2021 - ncbi.nlm.nih.gov

… The RT (read count) data were processed based on the quantile normalization method

using the Genowiz version 4.0.5.6 (Ocimum Biosolutions, India). Gene classification was …

 

Functional study of acetaldehyde dehydrogenase 1 (ALDH1) in keratinocytes: microarray integrating bioinformatics approaches

SJ Yin, MW Park, BN Lee, JM Yang… - Journal of …, 2021 - Taylor & Francis

… The numeric data were analyzed using Genowiz 4.0 TM (Ocimum Biosolutions, India). After

… Data were normalized with Genowiz 4.0 TM (Ocimum Biosolutions, India) software. Scatter …

 

[HTML] Association of protein Z with prediabetes and type 2 diabetes

YU Bae, JH You, NH Cho, LE Kim… - Endocrinology and …, 2021 - ncbi.nlm.nih.gov

… The numerical data were analyzed using the Genowiz 4.0 software (Ocimum Biosolutions,

Indianapolis, IN, USA). After analysis, the data on protein information were annotated using …

 

 

 

2020

Functional study of 14-3-3 protein epsilon (YWHAE) in keratinocytes: microarray integrating bioinformatics approaches

SJ Yin, JR Lee, H Kwak, BN Lee, JW Han… - Journal of …, 2020 - Taylor & Francis

… The numeric data were analyzed using Genowiz 4.0™ (Ocimum Biosolutions, India). After …

Data were normalized with Genowiz 4.0™ (Ocimum Biosolutions, India) software. Scatter plot …

 

Effects of enzymatically modified chestnut starch on the gut microbiome, microbial metabolome, and transcriptome of diet-induced obese mice

ES Lee, EJ SongYD Nam, TG Nam, HJ Kim… - International Journal of …, 2020 - Elsevier

… The read count data were processed based on the global normalization method using

Genowiz version 4.0.5.6 (Ocimum Biosolutions, Hyderabad, India). Gene classification was based …

 

HTML] Anti-inflammatory effect of sulforaphane on LPS-stimulated RAW 264.7 cells and ob/ob mice

SS Ranaweera, CY DissanayakeP Natraj… - Journal of veterinary …, 2020 - ncbi.nlm.nih.gov

… The Read count (RT) data were analyzed based on the Quantile normalization method

using the Genowiz™ version 4.0.5.6 (Ocimum Biosolutions, India). The PPI network was …

 

 

[HTML] Comparison of transcriptome between high-and low-marbling fineness in longissimus thoracis muscle of Korean cattle

SH Beak, M Baik - Animal Bioscience, 2022 - ncbi.nlm.nih.gov

… The read count data were processed based on the quantile normalization method using

Genowiz ver. 4.0.5.6 (Ocimum Biosolutions, Hyderabad, India). For functional annotation, we …

 

Protein profiling and angiogenic effect of hypoxia-cultured human umbilical cord blood-derived mesenchymal stem cells in hindlimb ischemia

KH Han, AK Kim, MH Kim, DH Kim, HN Go, D Kang… - Tissue and Cell, 2017 - Elsevier

… The numeric data were analyzed with Genowiz 4.0TM (Ocimum Biosolutions, India) and

protein information was annotated by means of the UniProt DB. The phosphorylation ratio was 

Dynein-mediated nuclear translocation of yes-associated protein through microtubule acetylation controls fibroblast activation

E You, P Ko, J Jeong, S Keum, JW Kim, YJ Seo… - Cellular and Molecular …, 2020 - Springer

… The Read Count data were processed based on the Global normalization method using

the Genowiz™ version 4.0.5.6 (Ocimum Biosolutions, India). Hierarchical clustering analysis 

 

2019

 

 

[HTML] Enhanced Anti-Cancer Effects of Conditioned Medium from Hypoxic Human Umbilical Cord–Derived Mesenchymal Stem Cells

KH Han, AK Kim, GJ Jeong, HR Jeon… - … journal of stem cells, 2019 - ncbi.nlm.nih.gov

… The data were analyzed using Genowiz 4.0TM (Ocimum Biosolutions, India) and proteins

that were upregulated or downregulated in H-CM compared with N-CM (>1.5 fold) were …

 

Histone demethylase KDM3B regulates the transcriptional network of cell-cycle genes in hepatocarcinoma HepG2 cells

MJ An, DH Kim, CH Kim, M Kim, S Rhee, SB Seo… - Biochemical and …, 2019 - Elsevier

… The RC (Read Count) data were processed based on Quantile normalization method using

the Genowiz™ version 4.0.5.6 (Ocimum Biosolutions, India). Gene classification and gene …

 

Annona atemoya leaf extract ameliorates cognitive impairment in amyloid-β injected Alzheimer's disease-like mouse model

HS Lim, YJ Kim, E Sohn, J Yoon… - Experimental …, 2019 - journals.sagepub.com

… Data normalization was conducted using the Genowiz 4.0 (Ocimum Biosolutions, Gaithersburg,

MD) and determined the average intensity of samples comparable to that of all genes. …

 

Dexamethasone induces a specific form of ramified dysfunctional microglia

MJ Park, HS Park, MJ You, J Yoo, SH Kim… - Molecular …, 2019 - Springer

… The RT (Read Count) data were processed based on global normalization method using

the Genowiz™ version 4.0.5.6 (Ocimum Biosolutions, India). Gene classification was based on …

 

2018

 

 

Histone demethylase KDM7A controls androgen receptor activity and tumor growth in prostate cancer

KH Lee, S Hong, M Kang, CW Jeong… - … Journal of Cancer, 2018 - Wiley Online Library

… The RT (Read Count) data were processed based on Global normalization method using

the Genowiz ™ version 4.0.5.6 (Ocimum Biosolutions, India). We performed gene clustering …

 

[HTML] The LuxS/AI-2 quorum-sensing system of Streptococcus pneumoniae is required to cause disease, and to regulate virulence-and metabolism-related genes in …

MK YadavJE Vidal, YY Go, SH Kim… - Frontiers in cellular …, 2018 - frontiersin.org

… The microarray data were analyzed using Genowiz 4.0™ (Ocimum Biosolutions,

Hyderabad, India), and normalized with Global LOWESS. The cutoffs for upregulated and …

 

Phytochemical allylguaiacol exerts a neuroprotective effect on hippocampal cells and ameliorates scopolamine-induced memory impairment in mice

HS Lim, BY Kim, YJ Kim, SJ Jeong - Behavioural Brain Research, 2018 - Elsevier

… Normalized data were analyzed using Genowiz 4.0 (Ocimum Biosolutions, India). The

normalization makes the average intensity of all samples numerically equivalent to the average …

 

Licochalcone A attenuates acne symptoms mediated by suppression of NLRP3 inflammasome

G YangHE Lee, SH Yeon, HC Kang… - Phytotherapy …, 2018 - Wiley Online Library

… The RT (Read Count) data were processed based on Quantile normalization method

using the Genowiz ™ version 4.0.5.6 (Ocimum Biosolutions, Hyderabad, India). …

 

2017

[HTML] Enhanced Anti-Cancer Effects of Conditioned Medium from Hypoxic Human Umbilical Cord–Derived Mesenchymal Stem Cells

KH Han, AK Kim, GJ Jeong, HR Jeon… - … journal of stem cells, 2019 - ncbi.nlm.nih.gov

… The data were analyzed using Genowiz 4.0TM (Ocimum Biosolutions, India) and proteins

that were upregulated or downregulated in H-CM compared with N-CM (>1.5 fold) were 

 

Expression and biochemical analysis of codon-optimized polyphenol oxidase from Camellia sinensis (L.) O. Kuntze in E. coli

S Singh, D SinghS Kumar - Process Biochemistry, 2017 - Elsevier

… 288 bp of CsPPO. In addition, codons were optimized for the expression of CsPPO synin E. coli using OptGene™ (Ocimum Biosolutions, USA) as mentioned in supplementary data (Supplementary Fig. 1). CsPPO syn was synthesized …

 

Estimation of low-dose radiation-responsive proteins in the absence of genomic instability in normal human fibroblast cells

JH Yim, JM Yun, JY Kim, SY Nam… - International Journal of …, 2017 - Taylor & Francis

… , the normalization data were analyzed using Genewiz 4.0™ (Ocimum Biosolution, India). All

… The numerical data were analyzed using Genexiz 4.0™ (Ocimum Biosolutions, India). After …

Save Cite Cited by 9 Related articles All 3 versions

 

Control of cancer stem cell like population by intracellular target identification followed by the treatment with peptide-siRNA complex

JS Suh, HJ Lee, H Nam, BS Jo, DW Lee, JH Kim… - Biochemical and …, 2017 - Elsevier

… The numeric data were analyzed using Genowiz 4.0TM (Ocimum Biosolutions, Hyderabad,

India). Phosphorylation ratio was calculated as below. phosphorylation ratio = phospho …

 

[HTML] Characteristics of a regulator of G-protein signaling (RGS) rgsC in Aspergillus fumigatus

Y Kim, IB Heo, JH Yu, KS Shin - Frontiers in microbiology, 2017 - frontiersin.org

… Loess normalization and selection of fold-changed genes were performed using GenoWiz

4.0 (Ocimum biosolutions, India). The data is available in the Gene Expression Omnibus (GEO…

 

An ultra-effective method of generating extramultipotent cells from human fibroblasts by ultrasound

YS Lee, H Heo, J Lee, SU Moon, WY Jung, YK Park… - Biomaterials, 2017 - Elsevier

… The RC (Read Count) data were processed based on the quantile normalization method

using Genowiz ™ version 4.0.5.6 (Ocimum Biosolutions, India). Gene classification was based 

 

Protein profiling and angiogenic effect of hypoxia-cultured human umbilical cord blood-derived mesenchymal stem cells in hindlimb ischemia

KH Han, AK Kim, MH Kim, DH Kim, HN Go, D Kang… - Tissue and Cell, 2017 - Elsevier

… The numeric data were analyzed with Genowiz 4.0TM (Ocimum Biosolutions, India) and

protein information was annotated by means of the UniProt DB. The phosphorylation ratio was …

 

Bioactivity, Molecular Docking, and Pharmacophore Modeling of Mycobacterium tuberculosis: A Study Targeting the Microarray Data of the Microbe

NK Soni - Asian Journal of Pharmaceutics (AJP): Free full …, 2017 - asiapharmaceutics.info

… Microarray data analysis was done by Genowiz software. Mycobacterium sp. data were

taken from GEO database (NCBI-DataSet Record GDS326) to focus on the DNA repair …

 

Phosphoprotein profiles of candidate markers for early cellular responses to low-dose γ-radiation in normal human fibroblast cells

JH Yim, JM Yun, JY Kim, IK Lee… - Journal of Radiation …, 2017 - academic.oup.com

… The numerical data were analyzed using Genowiz 4.0 TM (Ocimum Biosolutions, India).

After these analyses, the protein information was annotated using the UniProt database. The …

 

 

An ultra-effective method of generating extramultipotent cells from human fibroblasts by ultrasound

YS Lee, H Heo, J Lee, SU Moon, WY Jung, YK Park… - Biomaterials, 2017 - Elsevier

… The RC (Read Count) data were processed based on the quantile normalization method

using Genowiz ™ version 4.0.5.6 (Ocimum Biosolutions, India). Gene classification was based …

 

[HTML] Global transcriptome profile reveals abundance of DNA damage response and repair genes in individuals from high level natural radiation areas of Kerala …

V Jain, B Das - PloS one, 2017 - journals.plos.org

… Bioinformatic analysis was carried out using Genowiz ™ ver. 4.0 (Ocimum Biosolutions,

Hyderabad, India) software. In the present study, for GO analysis, the data from Gene Ontology …

 

Cdon deficiency causes cardiac remodeling through hyperactivation of WNT/β-catenin signaling

MH Jeong, HJ Kim, JH Pyun, KS Choi… - Proceedings of the …, 2017 - National Acad Sciences

… The RT (read count) data were processed based on the quantile normalization method

using Genowiz version 4.0.5.6 (Ocimum Biosolutions). …

 

[HTML] Development of zebrafish medulloblastoma-like PNET model by TALEN-mediated somatic gene inactivation

J Shim, JH Choi, MH Park, H Kim, JH Kim, SY Kim… - Oncotarget, 2017 - ncbi.nlm.nih.gov

… The RT (Read Count) data were processed based on Quantile normalization method

using the Genowiz ™ version 4.0.5.6 (Ocimum Biosolutions). Cytoscape (version 2.7, http://www.…

 

Transforming growth factor-β promotes liver tumorigenesis in mice via up-regulation of snail

H Moon, HL Ju, SI Chung, KJ Cho, JW Eun, SW Nam… - Gastroenterology, 2017 - Elsevier

… The RT (Read Count) data were processed based on Quantile normalization method

using the Genowiz version 4.0.5.6 (Ocimum Biosolutions, Hyderabad, India). Gene functional …

 

2016

[HTML] Identification of novel therapeutic targets in the secretome of ionizing radiation‑induced senescent tumor cells

HJ Hwang, SH Jung, HC Lee, NK Han… - Oncology …, 2016 - spandidos-publications.com

… The obtained numerical data were analyzed using Genowiz 4.0™ (Ocimum Biosolutions,

Indianapolis, IN, USA). Following analysis, the protein data were annotated using UniProt DB (…

 

 

Latent Kaposi's sarcoma-associated herpesvirus infection in bladder cancer cells promotes drug resistance by reducing reactive oxygen species

S Lee, J Jang, H Jeon, J Lee, SM Yoo, J Park… - Journal of …, 2016 - Springer

… The numeric data were analyzed using Genowiz 4.0TM (Ocimum Biosolutions). The array

data were deposited in NCBI’s Gene Expression Omnibus (GEO) and can be accessed by 

 

[HTML] Characterization of gprK Encoding a Putative Hybrid G-Protein-Coupled Receptor in Aspergillus fumigatus

MG Jung, SS Kim, JH Yu, KS Shin - PLoS One, 2016 - journals.plos.org

… Loess normalization and selection of fold-changed genes were performed using GenoWiz

4.0 (Ocimum biosolutions, India). The data is available in the Gene Expression Omnibus (GEO…

 

[HTML] Enhanced anti-tumor activity and cytotoxic effect on cancer stem cell population of metformin-butyrate compared with metformin HCl in breast cancer

KM Lee, M Lee, J Lee, SW Kim, HG Moon, DY Noh… - Oncotarget, 2016 - ncbi.nlm.nih.gov

… The numeric data were analyzed using the Genowiz 4.0 software (Ocimum Biosolutions,

India), and protein data were annotated using the UniProt DB (www.uniprot.org). …

 

 

 

2015

 

Process for designing diverged, codon-optimized large repeated dna sequences

DJ Merlo, I Larrinua, S Bevan - US Patent App. 14/415,115, 2015 - Google Patents

… sequence according to predetermined parameters. In particular embodiments, the computer-implemented software program may be OPTGENE™ (available from Ocimum Biosolutions). A sample amino acid repeat sequence.

 

[HTML] Prognostic significance of CREB-binding protein and CD81 expression in primary high grade non-muscle invasive bladder cancer: identification of novel …

MS Lee, JH Kim, JS Lee, SJ Yun, WJ Kim, H Ahn… - PLoS …, 2015 - journals.plos.org

… The numeric data were analyzed using Genowiz 4.0 (Ocimum Biosolutions, India). Global

normalization was used for data analysis. A 2-class t-test or paired t-test was performed to …

 

[HTML] Pseudomonas aeruginosa DesB Promotes Staphylococcus aureus Growth Inhibition in Coculture by Controlling the Synthesis of HAQs

S Kim, Y Yoon, KH Choi - PloS one, 2015 - journals.plos.org

… The microarray data were normalized and analyzed using Genowiz 4.0 (Ocimum

Biosolutions, India). Total 5544 genes were analyzed, and among these, the comparative …

 

HTML] Optimal route for human umbilical cord blood-derived mesenchymal stem cell transplantation to protect against neonatal hyperoxic lung injury: gene …

DK Sung, YS Chang, SY AhnSI Sung, HS Yoo… - PloS one, 2015 - journals.plos.org

… All genes meeting the cut-off criteria were further analyzed by hierarchical clustering and

K-means clustering using the GENOWIZ Data Mining Tool (Ocimum Biosolutions, India). For …

 

[HTML] The Small Molecule DAM Inhibitor, Pyrimidinedione, Disrupts Streptococcus pneumoniae Biofilm Growth In Vitro

MK Yadav, YY Go, SW Chae, JJ Song - PLoS One, 2015 - journals.plos.org

… All data normalization and the selection of differentially expressed genes were performed

using GenoWiz 4.0 (Ocimum Biosolutions, India). Genes were filtered by removing flag-out …

 

Gene expression profile of high-fat diet-fed C57BL/6J mice: in search of potential role of azelaic acid

S Muthulakshmi, AK Chakrabarti… - Journal of physiology and …, 2015 - Springer

… Genowiz microarray data analysis was employed with pathway analysis tool (Ocimum

Biosolutions, Hyderabad, India) for the data analysis of microarray experiments. Genes with …

[HTML] Deoxycytidine production by a metabolically engineered Escherichia coli strain

JS Kim, BS Koo, HH Hyun… - Microbial cell …, 2015 - microbialcellfactories.biomedcentral …

… Microarray data analysis was carried out by Genowiz 4.0™ (Ocimum Biosolutions, India).

The mean signal intensity values of the duplicate spots were averaged (A value = [(Cy5 signal …

[HTML] Role of AcsR in expression of the acetyl-CoA synthetase gene in Vibrio vulnificus

MJ Kim, J Kim, HY Lee, HJ Noh, KH Lee, SJ Park - BMC microbiology, 2015 - Springer

… Normalization was carried out using global loess algorithm [60] using Genowiz 4.0 TM (Ocimum

Biosolutions). The averages of the normalized ratios were calculated by dye-normalized 

 

2014

 

Suppression mechanism of the calcium sensitivity in Saccharomyces cerevisiae ptp2Δmsg5Δ double disruptant involves a novel HOG-independent function of Ssk2 …

WA LaviñaH Shahsavarani, A Saidi… - Journal of bioscience …, 2014 - Elsevier

… Gene enrichment analysis using Genowiz The microarray data were analyzed for distinctive

expression using Genowiz 4.0 (Ocimum Biosolutions, India). Replicated gene values were …

 

An RNA interference based study for the role of ALDH1 in keratinocytes: DNA microarray, antibody–chip array and bioinformatics approaches

SJ Yin, D Park, YX Si, HY Chung, YD Park… - Process Biochemistry, 2014 - Elsevier

… Sample normalization was performed with Genowiz 4.0™ (Ocimum Biosolutions, India)

software. … Data were normalized with Genowiz 4.0™ (Ocimum Biosolutions, India) software. …

 

 

2013

A nutrigenomic framework to identify time-resolving responses of hepatic genes in diet-induced obese mice

HS Heo, E Kim, SM Jeon, EY Kwon, SK Shin, H Paik… - Molecules and …, 2013 - Springer

… 1. Clustering of hepatic gene transcripts For clustering of hepatic gene transcripts, the Self-Organizing Map (SOM) algorithm (Quackenbush, 2001) was applied. We used Genowiz (Ocimum Biosolutions, India) with the SOM tool to arrange all data samples …Cited by 8 Related articles

 

Functionally redundant protein phosphatase genes PTP2 and MSG5 co-regulate the calcium signaling pathway in Saccharomyces cerevisiae upon exposure to high …

WA LaviñaM Sugiyama, Y Kaneko… - Journal of bioscience and …, 2013 - Elsevier

… All strains were cultivated in YPDA media and calcium treatment was done by supplementing the YPDA medium with 0.3 M CaCl 2 . Four independent DNA microarray data were analyzed using Genowiz (Ocimum Biosolutions) …

Cited by 13 Related articles 

 

Role of pilus proteins in adherence and invasion of Streptococcus agalactiae to the lung and cervical epithelial cells

P Sharma, H Lata, DK Arya, AK Kashyap… - Journal of Biological …, 2013 - ASBMB

… Hybridized chips were scanned using an Affymetrix 428TMArray scanner at three different PMT gains, and the images were analyzed using Genowiz software (Ocimum Biosolutions). Analysis was performed to detect differentially expressed genes among the groups …Cited by 27 Related articles

 

[HTML] Differentially expressed genes during contrasting growth stages of Artemisia annua for artemisinin content

P Nair, A Misra, A Singh, AK Shukla, MM Gupta… - PLoS …, 2013 - journals.plos.org

… chip. Hybridized chips were scanned using Affymetrix 428TM Array Scanner at three different PMT gains (40, 50 and 60) and the data was analyzed using Genowiz software (Ocimum Biosolutions, Hyderabad). Image analysis …

  Cited by 27 Related articles

 

[PDF] Suppression mechanism of the calcium sensitivity in Saccharomyces cerevisiae ptp2Dmsg5D double disruptant involves a novel HOG-independent function of …

WA LaviñaH Shahsavarani, A Saidi, M Sugiyama… - 2013 - researchgate.net

… was performed in triplicates. Gene enrichment analysis using Genowiz The microarray data were analyzed for distinctive expression using Genowiz 4.0 (Ocimum Biosolutions, India). Replicated gene values were combined …

  Related articles 

 

Decreased defense gene expression in tolerance versus resistance to Verticillium dahliae in potato

HH Tai, C Goyer, D De Koeyer, A Murphy… - Functional & integrative …, 2013 - Springer

… Analysis of microarray data. Microarray data were analyzed using the Genowiz 4.0 software (Ocimum Biosolutions, Gaithersburg, MD, USA). Double channel analysis of 07506-01 and 12120-03 data was done using print-tip loess normalization with a smoothing factor of 0.1 … Cited by 11 

 

Lowered expression levels of a tumor suppressor gene—caveolin-1 within dysregulated gene networks of Fanconi anemia

P ShyamsunderP Vidyasekar, AR Shukla, S Mohan… - Gene, 2013 - Elsevier

… The statistical analysis was carried out using R package and the biological analysis was carried out using Genowiz software (Ocimum Biosolutions, USA) and Gene Spring GX 10 (Agilent Technologies, USA). 2.5. Gene ontology analysis … Cited by 14 Related articles 

The role of aldehyde/alcohol dehydrogenase (AdhE) in ethanol production from glycerol by Klebsiella pneumoniae

BR Oh, WK Hong, SY Heo, M Joe, JW Seo… - Journal of industrial …, 2013 - Springer

… expression ratios (reference vs. test) were obtained. Microarray data analysis was performed using Genowiz 4.0 (Ocimum Biosolutions, Hyderabad, India). Global lowess was used for data analysis with normalization. The cut-offs for …Cited by 6 Related articles

 

[HTML] Escherichia coli YmdB regulates biofilm formation independently of its role as an RNase II modulator

T Kim, J Lee, K Kim - BMC microbiology, 2013 - bmcmicrobiol.biomedcentral.com

… ratios (reference vs. test sample). Microarray data analysis was performed using Genowiz 4.0™ (Ocimum Biosolutions). Global lowess (Locally weighted scatter plot smoothing) method was used for data normalization. The cut-off …  Cited by 7 Related articles All 11 versions 

 

Identification of novel target genes involved in Indian Fanconi anemia patients using microarray

P Shyamsunder, KS Ganesh, P Vidyasekar, S Mohan… - Gene, 2013 - Elsevier

… obtained. The statistical analysis was carried out using the R package and the biological analysis was carried out using Genowiz TM software (Ocimum Biosolutions, USA). 2.4. Functional clustering and gene ontology analysis …  Cited by 8 Related articles All 6 versions

 

 

2012

[PDF] Functional annotation of expressed sequence tags of Papaver somniferum

A Priya, H Tripathi, DK Yadav, F Khan, V Gupta… - Plant Omics, 2012 - pomics.com

... sequences retrieved from dbEST were cleaned, clustered and assembled through PHRED (Ewing and Green, 1998), RepeatMasker, Cross-Match, PHRAP and CAP3 (Huang and Madan, 1999) softwares with the help of Gencheck software (Ocimum Biosolutions, USA; www …

 

Gene expression profile of early in vitro biofilms of Streptococcus pneumoniae

MK Yadav, SK Kwon, CG Cho, SW Park… - Microbiology and …, 2012 - Wiley Online Library

… ratios (planktonic vs biofilm samples). Microarray data analysis was carried out by Genowiz 4.0 (Ocimum Biosolutions, Hyderabad, India). Global Lowess was used for data analysis with normalization. The benchmarks for up …Cited by 19 Related articles All 11 versions

 

N-acetyl cysteine suppresses the foam cell formation that is induced by oxidized low density lipoprotein via regulation of gene expression

HJ Sung, J Kim, Y Kim, SW Jang, J Ko - Molecular biology reports, 2012 - Springer

… Data were analyzed by Genowiz 4.0 TM (Ocimum Biosolutions, Hyderabad, India) and normalized using intensity-dependent global normalization (LOWESS). To categorize the functional annotation of genes, the database of Gene Ontology TM Consortium was applied …Cited by 15 Related articles All 11 versions

 

The effect of secretory factors of adipose-derived stem cells on human keratinocytes

KM Moon, YH Park, JS Lee, YB Chae, MM Kim… - International journal of …, 2012 - mdpi.com

The beneficial effects of adipose-derived stem cell conditioned medium (ADSC-CM) on skin regeneration have been reported. Although the mechanism of how ADSC-CM promotes skin regeneration is unclear, ADSC-CM contained various growth factors and it is an excellent raw …Cited by 90 Related articles All 16 versions 

 

[PDF] Differential Gene Expression Profile in Essential Hypertension

P Yang - Genetics and Pathophysiology of Essential …, 2012 - intechopen.com

… rats treated with FPTIII kidney Codelink Uniset Rat 1Bioarrays Affymetrix Scanner 428, Imagene and Genowiz softwares by Ocimum Biosolutions (India) and subjected to arsinh transformation 2398 genes were upregulated and …Related articles All 3 versions 

 

[HTML] Role of position 627 of PB2 and the multibasic cleavage site of the hemagglutinin in the virulence of H5N1 avian influenza virus in chickens and ducks

KA Schat, J Bingham, JM Butler, LM Chen, S Lowther… - PloS one, 2012 - journals.plos.org

Highly pathogenic H5N1 avian influenza viruses have caused major disease outbreaks in domestic and free-living birds with transmission to humans resulting in 59% mortality amongst 564 cases. The mutation of the amino acid at position 627 of the viral polymerase basic-2 protein …Cited by 39 Related articles All 21 versions 

 

Activation tagging in Solanum tuberosum: Innate immune activation affects potato tuber periderm development

D Frank - 2012 - qspace.library.queensu.ca

… Page 30. ` 19 Microarray analysis Microarray data were analyzed using the Genowiz 4.1 software (Ocimum Biosolutions, Madhapur, Hyderabad). For double channel analysis, data was normalized using print-tip lowess normalization with a smoothing factor of 0.1 …Related articles All 2 versions 

 

[HTML] biomedcentral.com

[HTML] Non structural protein of avian influenza A (H11N1) virus is a weaker suppressor of immune responses but capable of inducing apoptosis in host cells

S MukherjeeS Majumdar, VC Vipat… - Virology …, 2012 - virologyj.biomedcentral.com

The Non-Structural (NS1) protein of Influenza A viruses is an extensively studied multifunctional protein which is commonly considered as key viral component to fight against host immune responses. Even though there has been a lot of studies on the involvement of NS1 protein …Cited by 14 Related articles All 19 versions 

 

 

Functional Analysis of Vibrio vulnificus SmcR, a Quorum-sensing Master Regulator, as a Novel Control Target

김승민 - 2012 - s-space.snu.ac.kr

Page 1. 저작자표시-비영리-변경금지 2.0 대한민국 이용자는 아래의 조건을 따르는 경우에 한하여 자유롭게 ● 이 저작물을 복제, 배포, 전송, 전시, 공연 및 방송할 수 있습니다. 다음과 같은 조건을 따라야 합니다: ● 귀하는, 이 저작물의 …

 

[PDF] Yersiniosis and Food Safety

K Isshiki, RC Ray, D Montet - downloads.hindawi.com

Page 1. Journal of Pathogens Guest Editors: Latiful Bari, Dike O. Ukuku, Kenji Isshiki, Ramesh C. Ray, and Didier Montet Yersiniosis and Food Safety Page 2. Yersiniosis and Food Safety Page 3. Journal of Pathogens Yersiniosis and Food Safety …Related articles 

 

 

2011

 

HTML] A review on worldwide essential software resources in pharmacy

PY Mali, SJ Panchal - Chronicles of Young Scientists, 2011 - cysonline.org

... history recording, etc. http://www.applied-maths.com/gelcompar/gelcompar.htm GenchekIt is an integral database system that can used to access, store, organize and retrieve DNA, protein and vector sequences. http://www.ocimumbio ...Related articles All 2 versions Cite

 

Differentially expressed genes in sensitive and tolerant rice varieties in response to salt-stress

A Pandit, V Rai, TR Sharma, PC Sharma… - Journal of plant …, 2011 - Springer

… genes. The array data were analyzed using GeneChip Operating Software (GCOS 1.2) and Genowiz software (Ocimum Biosolutions, India). Robust multichip average (RMA) algorithm method was used for normalization. Two 

Cited by 24 Related articles All 7 versions

 

Transcriptomic analysis of Haematococcus lacustris during astaxanthin accumulation under high irradiance and nutrient starvation

DK Kim, SJ Hong, JH Bae, N Yim, ES Jin… - Biotechnology and …, 2011 - Springer

… sample). Microarray data analysis was carried out by Genowiz 4.0TM (Ocimum Biosolutions,India). Global LOWESS was used for data analysis with normalization. The benchmarks for up-regulated and down-regulated genes in hybridization were 2.0 and 0.5-fold, respectively …Cited by 30 Related articles All 7 versions

 

[PDF] CORRELATIONS BETWEEN VARIABLE BROILER PERFORMANCE AND GENE EXPRESSION AND MICROFLORA IN THE GUT RJ MOORE, D. STANLEY …

MS GEIER, TM CROWLEY - 22 nd ANNUAL AUSTRALIAN POULTRY … - researchgate.net

… Statistical tests were carried out using Genowiz Version 4.0. 5.3 (Ocimum Biosolutions) to determine all genes that were differentially expressed (p= 0.01) between the groups under consideration, either high and low AME groups or good and poor FCR groups …Related articles All 3 versions 

 

[HTML] Pandemic (H1N1) 2009 influenza virus induces weaker host immune responses in vitro: a possible mechanism of high transmissibility

S Mukherjee, VC Vipat, AC Mishra… - Virology …, 2011 - virologyj.biomedcentral.com

… Data Analysis. Microarray data analysis was carried out with GENOWIZ Microarray data and pathway analysis tool (Ocimum Biosolutions, Hyderabad, India). Replicated values for genes were merged and median values of the expression ratios were considered for the dataset …Cited by 27 Related articles All 19 versions 

The application of microarray technology to the identification of Tc1-like element sequences in fish genomes

R Wenne, L Handschuh, A Pocwierz-Kotus… - Marine Biology …, 2011 - Taylor & Francis

… After normalization (double-channel normalization between arrays based on subtraction of control probe mean, followed by log2-transformation) using Genowiz 4.0 software (Ocimum Biosolutions), the probe intensity data was analysed using R (http:// www.R-project.org; R …Cited by 3 Related articles All 5 versions

[PDF] Gene Expression Analysis for Type-2 Diabetes Mellitus-A Case Study on Healthy vs Diabetes with ParentalHistory

CS Vasamsetty, SR Peri, AA RaoK Srinivas… - International Journal of …, 2011 - ijetch.org

… expressed genes. ACKNOWLEDGMENT The authors acknowledge Ocimum Biosolutions, Hyderabad, India for analysis of the microarray data using their proprietary microarray analysis tool Genowiz. REFERENCES [1] John …

Related articles All 3 versions 

 

[PDF] Biochemical Characterization of Fermented Cucumber Spoilage using Nontargeted, Comprehensive, Two-dimensional Gas Chromatography-Time-of-Flight …

S Johanningsmeier - 2011 - repository.lib.ncsu.edu

Page 1. ABSTRACT JOHANNINGSMEIER, SUZANNE DUNN. Biochemical Characterization of Fermented Cucumber Spoilage using Non-targeted, Comprehensive, Two-dimensional Gas Chromatography-Time-of-Flight Mass …

Cited by 7 Related articles 

2010

Retrotransposon expression in ethanol-stressed Saccharomyces cerevisiae

D Stanley, S Fraser, GA Stanley… - Applied microbiology and …, 2010 - Springer

… reference pool (Gasch et al. 2000). Following hybridisation, the glass slides were scanned using a GenePix-Pro 4000B scanner and analysed using Genowiz™ 4.0.2.1 software (Ocimum Biosolutions). The original data from this

Cited by 16 Related articles All 19 versions

 

Transcriptional changes associated with ethanol tolerance in Saccharomyces cerevisiae

D Stanley, PJ Chambers, GA Stanley… - Applied microbiology …, 2010 - Springer

… Following hybridisation, the glass slides were scanned using a GenePix 4000B scanner and analysed using Genowiz™ 4.0.2.1 software (Ocimum Biosolutions). Microarray data were normalised prior to statistical analysis using a print tip Lowess (Yang et al …

Cited by 41 Related articles All 19 versions

 

[HTML] Host gene expression profiling in influenza A virus-infected lung epithelial (A549) cells: a comparative analysis between highly pathogenic and modified …

AK Chakrabarti, VC Vipat, S Mukherjee… - Virology …, 2010 - virologyj.biomedcentral.com

… Grid alignment was done using gene annotation files and raw data were extracted into MS EXCEL. Data Analysis. Data was analyzed using GENOWIZ Microarray and Pathway analysis tool (Ocimum Biosolutions, Hyderabad, India) 

  Cited by 58 Related articles All 20 versions 

 

Immunomodulatory cytokines determine the outcome of Japanese encephalitis virus infection in mice

SM Biswas, S Kar, R Singh… - Journal of medical …, 2010 - Wiley Online Library

… Data Analysis Data were analyzed using Genowiz Microarray and Pathway analysis tool (OcimumBiosolutions, Hyperabad, India). Replicated genes were merged and median values of the expression ratios of these repli- cated genes were further considered for the dataset …  Cited by 35 Related articles All 8 versions

 

Identification of differentially expressed genes for diabetes with parental history vs healthy using Microarray data analysis

VC Sekhar, AA Rao, PS Rao… - 2010 3rd International …, 2010 - ieeexplore.ieee.org

… is under progress. ACKNOWLEDGMENT The Authors Acknowledges Ocimum Biosolutions, Hyderabad, India. For analysis of the microarray data using their proprietary microarray analysis tool Genowiz. REFERENCES [I] M …Related articles All 2 versions

 

Chloroplast‐derived enzyme cocktails hydrolyse lignocellulosic biomass and release fermentable sugars

D Verma, A Kanagaraj, S Jin, ND Singh… - Plant biotechnology …, 2010 - Wiley Online Library

Skip to Main Content … Cited by 114 Related articles All 12 versions

 

[HTML] pARIS-htt: an optimised expression platform to study huntingtin reveals functional domains required for vesicular trafficking

R Pardo, M Molina-Calavita, G Poizat, G Keryer… - Molecular brain, 2010 - Springer

… pARIS-htt was engineered based on the cDNA of full-lengh human htt using OptGene (Ocimum

Biosolutions, Hyderabad, India) gene optimizing tool. Gene synthesis was performed by …

 

 

 

2009

[HTML] TLR2 polymorphisms, Arg753Gln and Arg677Trp, are not associated with increased burden of tuberculosis in Indian patients

D Biswas, SK Gupta, G Sindhwani… - BMC research …, 2009 - biomedcentral.com

... of Biochemistry, University of Delhi, India. To sense the SNPs in the selected DNA sequences, multiple sequence alignment was performed using built in interface for ClustalW[8] in Genchek software version 2.4.1.5 from Ocimum Biosolutions. ...Cited by 10 Related articles All 12 versions Cite

[HTML] BMC research notes Volume: 2 ISSN: 1756-0500 ISO Abbreviation: BMC Res Notes Publication Date: 2009

D Biswas, SK Gupta, G Sindhwani, A Patras - Detail: - biomedsearch.com

... of Biochemistry, University of Delhi, India. To sense the SNPs in the selected DNA sequences, multiple sequence alignment was performed using built in interface for ClustalW [8 ] in Genchek software version 2.4.1.5 from Ocimum Biosolutions. ...Related articles 

 

Global upregulation of gene expression associated with renal dysfunction in DOCA–salt-induced hypertensive rats occurs via signaling cascades involving epidermal …

IF BenterH Canatan, M Benboubetra, MHM Yousif… - Vascular …, 2009 - Elsevier

..supplier (GE Healthcare). Data analysis was performed using Imagene and Genowiz softwares by Ocimum Biosolutions (India) and subjected to arsinh transformationas described by Huber et al. (2002). The Benjamini and Cited by 24 Related articles 

 

A systematic approach to understanding bacterial responses to oxygen using Taverna and Webservices

S Maleki-Dizaji, M Rolfe, P Fisher… - … Conference on Biomedical …, 2009 - Springer

… (ie GeneSpring, GenoWiz) that can provide links to data- bases that define pathways, functional …Hybridisation took place to Ocimum OciChip K-12 V2 microarrays (Ocimum; Hydera- bad, India) at 42 °C overnight and washed according to the manufacturers instructions …Cited by 7 Related articles

 

[PDF] Transcriptional Activation of p53 gene and stabilization of p53 by its Amino-Terminus Domain

AK Sharma - 2009 - ir.inflibnet.ac.in

… information management system. Genowiz ™ incorporates an entire army of analysis tools for the efficient analysis of microarray data. Ocimum also provides analyses that are not required as a part of this study. A list of services provided in the microarray realm can be found at …Related articles 

 

[PDF] Generation and characterisation of ethanol-tolerant saccharomyces cerevisiae mutants

D Stanley - 2009 - vuir.vu.edu.au

Page 1. \ v;l \.TIOM AMD CHARACISRISA. jmm wBS Page 2. GENERATION AND CHARACTERISATION OF ETHANOL-TOLERANT Saccharomyces cerevisiae MUTANTS A thesis submitted for the degree of DOCTOR OF PHILOSOPHY By DRAGANA STANLEY …Related articles All 3 versions 

 

STATISTICAL ANALYSIS IDENTIFIES GENES IN PROSTATE CANCER

M Vidhya - International Journal of Medical Engineering and …, 2009 - Inderscience

... microarray data obtained for the normal and malignant samples for 8,900 genes was taken and it was analysed to identify the genes that are differently expressed in tumour samples in comparison to the normal samples from tissues and cell lines using the tool Genowiz™ 3.1. ...Related articles - All 7 versions

 

Application of Data Mining Algorithms in Pharmaceutical Research and Development

KV Balakin… - Pharmaceutical Data Mining, 2009 - Wiley Online Library

... ac.uk/microarray/maxd/ A data warehouse and visualization environment for genomic expression data Genowiz ™ http://www.ocimumbio.com/ web/default.asp A comprehensive multiplatform package for tracking and analyzing Gene Expressions data ...Related articles - All 3 versions

 

PANDEMIC (H1N1) 2009 INFLUENZA VIRUS INDUCES WEAKER HOST IMMUNE RESPONSES IN VITRO: A POSSIBLE MECHANISM OF HIGH TRANSMISSIBILITY

[PDF] from biomedcentral.com

S Mukherjee, VC Vipat, AC Mishra, SD Pawar… - Virol J, 2011 - biomedcentral.com

... Grid align- ment was done by gene annotation files and raw data were extracted into MS EXCEL[15]. Data Analysis Microarray data analysis was carried out with GENO- WIZ Microarray dataand pathway analysis tool (Oci- mum Biosolutions, Hyderabad, India). … Cited by 6 - Related articles - View as HTML - All 9 versions

 

A Systematic Approach to Understanding Bacterial Responses to Oxygen Using Taverna and Webservices

[PDF] from shef.ac.uk

S Maleki-Dizaji, M Rolfe, P Fisher… - … Conference on Biomedical …, 2009 - Springer

... 23 _____ (ie GeneSpring, GenoWiz) that can provide links to data- bases that define pathways, functional categories and gene ontologies. Many ...Cited by 1 - Related articles - All 3 versions

 

 New approach to Genomics Experients Taking Advantage of Virtual Laboratory System

[PDF] from poznan.pl

L Handschuh, M Lawenda, P Stępniak… - … Methods In Science …, 2009 - man.poznan.pl

... Raw data in a text file (csv, gpr or similar) are then submitted to normaliza- tion, filtration and high-level analysis, using sophisticated software (eg R Bioconductor, Multi Experiment Viewer, Gene Spring, Genowiz). Result reports are saved as text or graphic files (eg pdf, jpg). ...Cited by 3 - Related articles - View as HTML - All 2 versions

 

 

2008

 

[PDF] Subtype selectivity in phosphodiesterase 4 (PDE4): a bottleneck in rational drug design

RD Design - Current Pharmaceutical Design, 2008 - 203.199.182.73

Page 1. 3854 Current Pharmaceutical Design, 2008,14, 3854-3872 Subtype Selectivity in Phosphodiesterase 4 (PDE4): A Bottleneck in Rational Drug Design P. Srivani1, D. Usharani2'3, Eluvathingal D. Jemmis2'" and G. Narahari ...Cited by 22 Related articles All 9 versions Cite

Design of microarray probes for detection of mutations

P Almeida, L Carreto, JL Oliveira - … , 2008. BIOTECHNO'08. …, 2008 - ieeexplore.ieee.org

... efficiency and robustness, ie finding the best set of probes for specific hybridization conditions [4]. Several software packages already exist to assist on the design of microarray probes: AlleleID [5], Oligowiz [6], Gencheck [7], Oligo ... [7] OcimumBiosolutions, "GenChek," GenChek. ...Cited by 1 Related articles All 4 versions Cite

Visual software tools for bioinformatics

T Arndt - Journal of Visual Languages & Computing, 2008 - Elsevier

... View Within Article. Genchek [7] (available for Linux, Mac, Windows and Unix) is a comprehensive software suit. It has support for several operations on DNA and proteins. ... Gencheck is shown in Fig. 10. ...Cited by 4 Related articles All 2 versions Cite

 

[HTML] SERIAL CHANGES IN EXPRESSION OF FUNCTIONALLY CLUSTERED GENES IN PROGRESSION OF LIVER FIBROSIS IN HEPATITIS C PATIENTS

[HTML] from nih.gov

Y Takahara, M Takahashi, QW Zhang… - World journal of …, 2008 - ncbi.nlm.nih.gov

... The gene expression data were subjected to hierarchical clustering analysis using Genowiz™ software (Ocimum Biosolutions). ... All genes in Figure Figure11 were subjected to hierarchical clustering analysis using Genowiz™. ...

Cited by 11 - Related articles - BL Direct - All 8 versions

 

Differential gene expression analysis of a known hepatotoxin, N-acetyl-p-amino-phenol (APAP) as compared to its non-toxic analog, N-acetyl-m-amino-phenol (AMAP …

P Priyadarsiny, SK Khattar, R Malik… - The Journal of …, 2008 - J-STAGE

... Hierarchi- cal analysis and self-organizing maps were used to cluster the genes in different groups. Furthermore, gene annota- tion and pathway analysis was carried out using Genowiz software. RESULTS AND DISCUSSION ...Cited by 3 - Related articles - BL Direct - All 7 versions

 

[HTML] Nonvirally modified autologous primary hepatocytes correct diabetes and prevent target organ injury in a large preclinical model

[HTML] from plos.org

NKF Chen, J San Wong, IHC Kee, SH Lai… - PloS one, 2008 - dx.plos.org

... All statistical tests and the area under the curve (AUC) were calculated with GraphPad Prism (GraphPad Software Inc., USA). Cluster analysis of GeneChip® data was performed using algorithms in Genowiz (Ocimum Biosolutions Ltd., India). P<0.05 was considered significant. … Cited by 10 - Related articles - Cached - All 9 versions

 

 

[HTML] Nonvirally modified autologous primary hepatocytes correct diabetes and prevent target organ injury in a large preclinical model

NKF Chen, J San Wong, IHC Kee, SH Lai, CH Thng… - PLoS …, 2008 - journals.plos.org

BackgroundCurrent gene- and cell-based therapies have significant limitations which impede widespread clinical application. Taking diabetes mellitus as a paradigm, we have sought to overcome these limitations by ex vivo electrotransfer of a nonviral insulin expression vector into …  Cited by 25 Related articles All 14 versions 

 

[HTML] Serial changes in expression of functionally clustered genes in progression of liver fibrosis in hepatitis C patients

Y Takahara, M Takahashi, QW Zhang… - World journal of …, 2008 - ncbi.nlm.nih.gov

… This calculation was performed using SPSS (SPSS Inc., IL, USA). The gene expression data were subjected to hierarchical clustering analysis using Genowiz™ software (Ocimum Biosolutions). Pathway analysis of PCR data …Cited by 31 Related articles All 9 versions

 

Gene expression microarray data analysis demystified

PC Roberts - Biotechnology annual review, 2008 - Elsevier

Skip to main content Skip to article Elsevier logo: Journals & Books. Create accountSign in. Sign inCreate account. Journals & Books. Help. Download PDFDownload. Share.  Cited by 36 Related articles All 4 versions

 

Microarray Data Analysis Tool (MAT)

S Selvaraja - 2008 - rave.ohiolink.edu

Page 1. MICROARRAY DATA ANALYSIS TOOL (MAT) A Thesis Presented to The Graduate Faculty of The University of Akron In Partial Fulfillment of the Requirements for the Degree Master of Science Sudarshan Selvaraja December, 2008 Page 2. ii …  Related articles All 3 versions 

 

[PDF] Establishment of yeast platform for isoprenoid production

MA Asadollahi - Lyngby, Denmark: Technical University of Denmark, 2008 - orbit.dtu.dk

… Kiran also helped me with utilizing the OptGene software for the in silico metabolic … However, expression of geraniol synthase of Ocimum basilicum in yeast gave rise to the biosynthesis …

 

 

 

2007

Genomic and morphological features of a banchine polydnavirus: comparison with bracoviruses and ichnoviruses

R Lapointe, K Tanaka, WE Barney, JB Whitfield… - Journal of …, 2007 - Am Soc Microbiol ... University of Kentucky. The DNA sequences were first edited to remove vector sequences and then assembled using either SeqMan II (Lasergene DNAStar) or Genchek v. 2061 (Ocimum Biosolutions). Contigs were built using ...

Cited by 40 Related articles BL Direct All 8 versions Cite

 

< i> Pisum sativum contains a factor with strong homology to eIF5B

S Rasheedi, S Ghosh, M Suragani, N Tuteja… - Gene, 2007 - Elsevier

... Multiple sequence alignments and phylogenetic tree analysis were performed by CLUSTALW version1.74 (Thompson et al., 1994) and Genchek™ sequence analysis software package (Ocimum Biosolutions, India). Hydrophilicity ...Cited by 2 Related articles All 6 versions Cite

Shared and species-specific features among ichnovirus genomes

K Tanaka, R Lapointe, WE Barney, AM Makkay… - Virology, 2007 - Elsevier

... The DNA sequences were first edited to remove vector sequences and then assembled using either SeqMan II (Lasergene DNAStar) or Genchek v. 2061 (OcimumBiosolutions). Contigs were built with a minimum of 50 nt overlap ...Cited by 36 Related articles All 4 versions Cite

 

Automatic design of microarray probes for mutations detection

PRSG Almeida - 2007 - ria.ua.pt... 26 3.3. Genchek ..... 26 3.4. ... 27 Figure 3.2- OligoWiz software. .... 28 Figure 3.3 -

Genchek software..... 28 Figure 3.4 - OligoDesign software. ...Related articles All 2 versions

 

Analysis of expression data: an overview

A Grewal, P Lambert, J Stockton - Current protocols in human …, 2007 - Wiley Online Library

… X. DecisionSite for Microarray Analysis (Spotfire). X. X. Expressionist (GeneData). X. X. X.

GeneSpring (Agilent Technologies). X. X. Genowiz (Ocimum Biosolutions). X. X. RMAExpress 0.4.1 (Bolstad, 2006). X. S+ArrayAnalyzer (Insightful). X. X. X. X. TeraGenomics (IMC). X. X …  Cited by 24 Related articles All 7 versions

 

Gene expression assays

J Kirby, PR Heath, PJ Shaw, FC Hamdy - Advances in clinical chemistry, 2007 - Elsevier

Skip to main content …

Cited by 31 Related articles 

 

[PDF] Data Integration and Analysis: P. falciparum Microarray Data as a Case Study

R Rao, A Sivakumar, G Rao - bioinformatics.cs.vt.edu

… 6.ACKNOWLEDGMENTS We would like to thank Dr. Sandhya Kiran, Mr. JP Mehta and Ms. Madhuri for critical comments. We would also like to thank Ocimum Biosolutions Ltd. for their technical support and the Genowiz team for their encouragement. Page 5 …  Related articles All 3 versions 

 

23 Visualization of Protein Microarray Data

K Clancy - Functional Protein Microarrays in Drug Discovery, 2007 - books.google.com

… s Page 442. # GeneX Genowiz Longhorn Array Database LIMaS (Laboratory Information … net Ocimum Biosolutions Section of Molecular Genetics and Microbiology, Institute for Cellular and Molecular Biology, University of Texas at Austin Mammalian Genetics Unit, Harwell UK …Related articles

MICROARRAY ANALYSIS IN THE ZEBRAFISH (DANIO RERIO) LIVER AND TELENCEPHALON AFTER EXPOSURE TO LOW CONCENTRATION OF 17ALPHA-ETHINYLESTRADIOL

CJ Martyniuk, ER Gerrie, JT Popesku, M Ekker… - Aquatic toxicology, 2007 - Elsevier

... 2.4. Microarray analysis and gene categorization. Raw intensity data were analyzed using GenoWiz™. To normalize the microarray data, we log 2 transformed raw expression data and used the double channel normalization function in Genowiz. ...Cited by 40 - Related articles - All 9 versions

 

 [HTML] Software-MIAME-FGED

[HTML] from mged.org

N Abeygunawardena - 2007 - mged.org

... included! If you'd like to be informed of new developments as they occur, please join the maxd_announce mailing list."; Genowiz™ - A comprehensive multi platform package for tracking and analyzing Gene Expressions data. ...Cached

 

[CITATION] 23 Visualization of Protein Microarray Data

K Clancy - Functional protein microarrays in drug discovery, 2007 - CRC

Related articles

 

Gene expression assays

J Kirby, PR Heath, PJ Shaw… - Advances in clinical chemistry, 2007 - Elsevier

... Gene Sight, BioDiscovery. Expressionist, Gene Data. Chip Inspector, Genomatix. Teragenomic,IMC. JMP microarray, SAS. Genowiz, Ocimum Biosolutions. Genomics Suite, Partek. Resolver,Rosetta. Decision Site, Spotfire. Avadis, Strand Genomics. Freeware. …Cited by 15 - Related articles - BL Direct - All 5 versions

 

 

 

2006

 

Analysis of expression data: an overview

A Grewal, P Lambert, J Stockton - Current protocols in human …, 2007 - Wiley Online Library

… X. DecisionSite for Microarray Analysis (Spotfire). X. X. Expressionist (GeneData). X. X. X. GeneSpring (Agilent Technologies). X. X. Genowiz (Ocimum Biosolutions). X. X. RMAExpress 0.4.1 (Bolstad, 2006). X. S+ArrayAnalyzer (Insightful). X. X. X. X. TeraGenomics (IMC). X. X …  Cited by 24 Related articles All 7 versions

 

Genomic and morphological features of a banchine polydnavirus: comparison with bracoviruses and ichnoviruses

R Lapointe, K Tanaka, WE Barney, JB Whitfield… - Journal of …, 2007 - Am Soc Microbiol

… The DNA sequences were first edited to remove vector sequences and then assembled

using either SeqMan II (Lasergene DNAStar) or Genchek v. 2061 (Ocimum Biosolutions). …

 

Gene expression assays

J Kirby, PR Heath, PJ Shaw, FC Hamdy - Advances in clinical chemistry, 2007 - Elsevier

Skip to main content …Cited by 31 Related articles All 6 versions

 

[PDF] Data Integration and Analysis: P. falciparum Microarray Data as a Case Study

R Rao, A Sivakumar, G Rao - bioinformatics.cs.vt.edu

… 6.ACKNOWLEDGMENTS We would like to thank Dr. Sandhya Kiran, Mr. JP Mehta and Ms. Madhuri for critical comments. We would also like to thank Ocimum Biosolutions Ltd. for their technical support and the Genowiz team for their encouragement. Page 5 …  Related articles All 3 versions 

 

23 Visualization of Protein Microarray Data

K Clancy - Functional Protein Microarrays in Drug Discovery, 2007 - books.google.com

… s Page 442. # GeneX Genowiz Longhorn Array Database LIMaS (Laboratory Information … Ocimum Biosolutions Section of Molecular Genetics and Microbiology, Institute for Cellular andMolecular Biology, University of Texas at Austin Mammalian Genetics Unit, Harwell UK …

[PDF] DATA INTEGRATION AND ANALYSIS: P. FALCIPARUM MICROARRAY DATA AS A CASE STUDY

[PDF] from vt.edu

R Rao, A Sivakumar… - bioinformatics.cs.vt.edu

... In this paper, we explore further insights into published P. falciparum microarray data using the application Genowiz™. ... The genes involved in various steps of the pathway have been traced to their various clusters generated by using Genowiz™ SOM. ...Related articles - View as HTML - All 3 versions

 

Global gene expression analysis of the effects of vinblastine on endothelial cells, when eluted from a thermo‐responsive polymer

E McLucas, H Gallagher, Y Rochev… - … Research Part A, 2006 - Wiley Online Library

... analysis. Genowiz software and MAVI software (Ocimum Biosolutions) were then used to generate fold increases or decreases induced by the two different drug concentrations relative to the values generated for the polymer alone. ...Cited by 3 - Related articles - BL Direct - All 6 versions

 

 

Data Mining in Gene Expression Data Analysis: A Survey

J Han… - Processing and managing complex data for …, 2006 - books.google.com

Page 392. Data Mining in Gene Expression Data Analysis: A Survey 375 Chapter XII Data Mining in Gene Expression Data Analysis: A Survey Jilin Han, University of Oklahoma, USA Le Gruenwald, University of Oklahoma, USA ...Related articles

2005

Growth of Indian biotech companies, in the context of the international biotechnology industry

U Palnitkar - Journal of commercial biotechnology, 2005 - ingentaconnect.com

... Ocimum Biosolutions Labronica Inc., USA Global marketing of Biotracker-LIMS United Bioinformatics Inc., Canada Marketing rights for Gencheck and Biotracker Hospital for JointDiseases Orthopaedic Institute (HJD), New York Research into musculoskeletal disease using ...Cited by 5 Related articles All 7 versions Cite

 

 

The stability of the Arabidopsis transcriptome in transgenic plants expressing the marker genes nptII and uidA

SE Ouakfaoui, B Miki - The Plant Journal, 2005 - Wiley Online Library 

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